devtools::check - System command 'Rcmd.exe' failed, exit stauts:1, stdout + stderr:
I am currently developing a package for my PhD containing functions for the data analysis for my project. The setup is windows 10 and all files are saved locally on the PC and synchronised to One Drive.
I am able to build my package and was also able to check it. However I closed the R Studio and now (a few days later) that I wanted to work on it again (without changing anything from the code that was previously running with 0 errors, warnings and notes), it does not work. I can still build my package without error but I can not use devtools::check to check it. The output of devtools::check is:
On the Windows File Explorer I noticed that inside the package (name eEP.Analysis.V2) there is the R project folder where a lock file is not synchronized, as can be seen here:
Is it possible that this is the cause of the problem? How can I fix this?
Thank you very much for your help.
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Rscript: problems with inner_join
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Power Query: Get Data from an online Excel workbook (OneDrive, SharePoint)
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renv::diagnostics()as requestedDiagnostics Report -- renv [0.12.0] =================================== # Session Info ======================= R version 4.0.2 (2020-06-22) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 20.04.1 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0 locale: [1] LC_CTYPE=en_HK.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_HK.UTF-8 LC_COLLATE=en_HK.UTF-8 [5] LC_MONETARY=en_HK.UTF-8 LC_MESSAGES=en_HK.UTF-8 [7] LC_PAPER=en_HK.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_HK.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices datasets utils methods base other attached packages: [1] gtools_3.8.2 here_0.1 adegenet_2.1.3 ade4_1.7-15 loaded via a namespace (and not attached): [1] splines_4.0.2 shiny_1.5.0 expm_0.999-5 sp_1.4-2 [5] renv_0.12.0 LearnBayes_2.15.1 pillar_1.4.6 backports_1.1.9 [9] lattice_0.20-41 glue_1.4.2 digest_0.6.25 promises_1.1.1 [13] colorspace_1.4-1 htmltools_0.5.0 httpuv_1.5.4 Matrix_1.2-18 [17] plyr_1.8.6 pkgconfig_2.0.3 raster_3.3-13 gmodels_2.18.1 [21] purrr_0.3.4 xtable_1.8-4 scales_1.1.1 gdata_2.18.0 [25] later_1.1.0.1 tibble_3.0.3 mgcv_1.8-33 generics_0.0.2 [29] ggplot2_3.3.2 ellipsis_0.3.1 magrittr_1.5 crayon_1.3.4 [33] mime_0.9 deldir_0.1-29 nlme_3.1-149 MASS_7.3-53 [37] class_7.3-17 vegan_2.5-6 tools_4.0.2 lifecycle_0.2.0 [41] stringr_1.4.0 munsell_0.5.0 cluster_2.1.0 compiler_4.0.2 [45] e1071_1.7-3 tinytex_0.25 rlang_0.4.7 classInt_0.4-3 [49] units_0.6-7 grid_4.0.2 rstudioapi_0.11 igraph_1.2.5 [53] boot_1.3-25 gtable_0.3.0 codetools_0.2-16 DBI_1.1.0 [57] reshape2_1.4.4 R6_2.4.1 dplyr_1.0.2 fastmap_1.0.1 [61] seqinr_3.6-1 rprojroot_1.3-2 spdep_1.1-5 KernSmooth_2.23-17 [65] permute_0.9-5 ape_5.4-1 stringi_1.5.3 parallel_4.0.2 [69] Rcpp_1.0.5 vctrs_0.3.4 sf_0.9-6 spData_0.3.8 [73] tidyselect_1.1.0 xfun_0.17 coda_0.19-3 # Project ============================ Project path: "~/Documents/GitHub/CIMMYT" # Status ============================= * This project has not yet been snapshotted -- 'renv.lock' does not exist. The following package(s) are installed but not recorded in the lockfile: _ utf8 [1.1.4] clipr [0.7.0] tidyselect [1.1.0] lme4 [1.1-23] FactoMineR [2.3] maptools [1.0-2] cpp11 [0.2.1] sourcetools [0.1.7] munsell [0.5.0] units [0.6-7] statmod [1.4.34] withr [2.2.0] colorspace [1.4-1] highr [0.8] knitr [1.29] leaps [3.1] rstudioapi [0.11] ggsignif [0.6.0] labeling [0.3] farver [2.0.3] rprojroot [1.3-2] coda [0.19-3] LearnBayes [2.15.1] vctrs [0.3.4] generics [0.0.2] xfun [0.17] adegenet [2.1.3] R6 [2.4.1] markdown [1.1] RcppEigen [0.3.3.7.0] isoband [0.2.2] RcppArmadillo [0.9.900.3.0] assertthat [0.2.1] promises [1.1.1] scales [1.1.1] nnet [7.3-14] gtable [0.3.0] conquer [1.0.2] processx [3.4.4] rlang [0.4.7] MatrixModels [0.4-1] scatterplot3d [0.3-41] rstatix [0.6.0] selectr [0.4-2] broom [0.7.0] yaml [2.2.1] reshape2 [1.4.4] abind [1.4-5] modelr [0.1.8] backports [1.1.9] httpuv [1.5.4] spData [0.3.8] gaston [1.5.6] ggplot2 [3.3.2] ellipsis [0.3.1] raster [3.3-13] RColorBrewer [1.1-2] polynom [1.4-0] Rcpp [1.0.5] plyr [1.8.6] base64enc [0.1-3] progress [1.2.2] classInt [0.4-3] purrr [0.3.4] ps [1.3.4] prettyunits [1.1.1] ggpubr [0.4.0] openssl [1.4.2] deldir [0.1-29] viridis [0.5.1] cowplot [1.1.0] ggrepel [0.8.2] haven [2.3.1] cluster [2.1.0] fs [1.5.0] here [0.1] factoextra [1.0.7] tinytex [0.25] magrittr [1.5] data.table [1.13.0] pixmap [0.4-11] openxlsx [4.1.5] SparseM [1.78] gmodels [2.18.1] reprex [0.3.0] whisker [0.4] matrixStats [0.56.0] pkgload [1.1.0] hms [0.5.3] mime [0.9] evaluate [0.14] xtable [1.8-4] pbkrtest [0.4-8.6] rio [0.5.16] jpeg [0.1-8.1] readxl [1.3.1] gridExtra [2.3] testthat [2.3.2] ellipse [0.4.2] tibble [3.0.3] KernSmooth [2.23-17] crayon [1.3.4] minqa [1.2.4] htmltools [0.5.0] segmented [1.2-0] mgcv [1.8-33] later [1.1.0.1] spdep [1.1-5] tidyr [1.1.2] expm [0.999-5] RcppParallel [5.0.2] lubridate [1.7.9] DBI [1.1.0] corrplot [0.84] praise [1.0.0] dbplyr [1.4.4] MASS [7.3-53] sf [0.9-6] boot [1.3-25] sys [3.4] Matrix [1.2-18] ade4 [1.7-15] car [3.0-9] readr [1.3.1] permute [0.9-5] cli [2.0.2] gdata [2.18.0] igraph [1.2.5] forcats [0.5.0] pkgconfig [2.0.3] flashClust [1.01-2] foreign [0.8-80] sp [1.4-2] xml2 [1.3.2] BH [1.72.0-3] rematch [1.0.1] rvest [0.3.6] stringr [1.4.0] callr [3.4.4] digest [0.6.25] vegan [2.5-6] rmarkdown [2.3] cellranger [1.1.0] dendextend [1.14.0] curl [4.3] shiny [1.5.0] gtools [3.8.2] commonmark [1.7] quantreg [5.67] nloptr [1.2.2.2] hierfstat [0.5-7] lifecycle [0.2.0] nlme [3.1-149] jsonlite [1.7.1] carData [3.0-4] seqinr [3.6-1] desc [1.2.0] viridisLite [0.3.0] askpass [1.1] fansi [0.4.1] pillar [1.4.6] ggsci [2.9] lattice [0.20-41] fastmap [1.0.1] httr [1.4.2] pkgbuild [1.1.0] glue [1.4.2] zip [2.1.1] png [0.1-7] class [7.3-17] stringi [1.5.3] blob [1.2.1] latticeExtra [0.6-29] renv [0.12.0] dplyr [1.0.2] tidyverse [1.3.0] e1071 [1.7-3] ape [5.4-1] Use `renv::snapshot()` to add these packages to your lockfile. # Packages =========================== This project has not yet been snapshotted: 'renv.lock' does not exist. Library Source Lockfile Source Path Dependency BH 1.72.0-3 CRAN <NA> <NA> [1] indirect DBI 1.1.0 CRAN <NA> <NA> [1] indirect FactoMineR 2.3 CRAN <NA> <NA> [1] indirect KernSmooth 2.23-17 CRAN <NA> <NA> [2] indirect LearnBayes 2.15.1 CRAN <NA> <NA> [1] indirect MASS 7.3-53 CRAN <NA> <NA> [2] indirect Matrix 1.2-18 CRAN <NA> <NA> [2] indirect MatrixModels 0.4-1 CRAN <NA> <NA> [1] indirect R6 2.4.1 CRAN <NA> <NA> [1] indirect RColorBrewer 1.1-2 CRAN <NA> <NA> [1] indirect Rcpp 1.0.5 CRAN <NA> <NA> [1] indirect RcppArmadillo 0.9.900.3.0 CRAN <NA> <NA> [1] indirect RcppEigen 0.3.3.7.0 CRAN <NA> <NA> [1] indirect RcppParallel 5.0.2 CRAN <NA> <NA> [1] indirect SparseM 1.78 CRAN <NA> <NA> [1] indirect abind 1.4-5 CRAN <NA> <NA> [1] indirect ade4 1.7-15 CRAN <NA> <NA> [1] indirect adegenet 2.1.3 CRAN <NA> <NA> [1] direct ape 5.4-1 CRAN <NA> <NA> [1] indirect askpass 1.1 CRAN <NA> <NA> [1] indirect assertthat 0.2.1 CRAN <NA> <NA> [1] indirect backports 1.1.9 CRAN <NA> <NA> [1] indirect base64enc 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<NA> <NA> [1] indirect datasets <NA> <NA> <NA> <NA> [2] indirect dbplyr 1.4.4 CRAN <NA> <NA> [1] indirect deldir 0.1-29 CRAN <NA> <NA> [1] indirect dendextend 1.14.0 CRAN <NA> <NA> [1] indirect desc 1.2.0 CRAN <NA> <NA> [1] indirect digest 0.6.25 CRAN <NA> <NA> [1] indirect dplyr 1.0.2 CRAN <NA> <NA> [1] direct e1071 1.7-3 CRAN <NA> <NA> [1] indirect ellipse 0.4.2 CRAN <NA> <NA> [1] indirect ellipsis 0.3.1 CRAN <NA> <NA> [1] indirect evaluate 0.14 CRAN <NA> <NA> [1] indirect expm 0.999-5 CRAN <NA> <NA> [1] indirect factoextra 1.0.7 CRAN <NA> <NA> [1] direct fansi 0.4.1 CRAN <NA> <NA> [1] indirect farver 2.0.3 CRAN <NA> <NA> [1] indirect fastmap 1.0.1 CRAN <NA> <NA> [1] indirect flashClust 1.01-2 CRAN <NA> <NA> [1] indirect forcats 0.5.0 CRAN <NA> <NA> [1] indirect foreign 0.8-80 CRAN <NA> <NA> [1] indirect fs 1.5.0 CRAN <NA> <NA> [1] indirect gaston 1.5.6 CRAN <NA> <NA> [1] indirect gdata 2.18.0 CRAN <NA> <NA> [1] indirect generics 0.0.2 CRAN <NA> <NA> [1] indirect ggplot2 3.3.2 CRAN <NA> <NA> [1] direct ggpubr 0.4.0 CRAN <NA> <NA> [1] indirect ggrepel 0.8.2 CRAN <NA> <NA> [1] indirect ggsci 2.9 CRAN <NA> <NA> [1] indirect ggsignif 0.6.0 CRAN <NA> <NA> [1] indirect glue 1.4.2 CRAN <NA> <NA> [1] indirect gmodels 2.18.1 CRAN <NA> <NA> [1] indirect grDevices <NA> <NA> <NA> <NA> [2] indirect graphics <NA> <NA> <NA> <NA> [2] indirect grid <NA> <NA> <NA> <NA> [2] indirect gridExtra 2.3 CRAN <NA> <NA> [1] direct gtable 0.3.0 CRAN <NA> <NA> [1] indirect gtools 3.8.2 CRAN <NA> <NA> [1] direct haven 2.3.1 CRAN <NA> <NA> [1] indirect here 0.1 CRAN <NA> <NA> [1] direct hierfstat 0.5-7 CRAN <NA> <NA> [1] direct highr 0.8 CRAN <NA> <NA> [1] indirect hms 0.5.3 CRAN <NA> <NA> [1] indirect htmltools 0.5.0 CRAN <NA> <NA> [1] indirect httpuv 1.5.4 CRAN <NA> <NA> [1] indirect httr 1.4.2 CRAN <NA> <NA> [1] indirect igraph 1.2.5 CRAN <NA> <NA> [1] indirect isoband 0.2.2 CRAN <NA> <NA> [1] indirect jpeg 0.1-8.1 CRAN <NA> <NA> [1] indirect jsonlite 1.7.1 CRAN <NA> <NA> [1] indirect knitr 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[1]: /home/alex/Documents/GitHub/CIMMYT/renv/library/R-4.0/x86_64-pc-linux-gnu [2]: /tmp/RtmpdZmmFV/renv-system-library # User Profile ======================= [no user profile detected] # Settings =========================== List of 6 $ external.libraries : chr(0) $ ignored.packages : chr(0) $ package.dependency.fields: chr [1:3] "Imports" "Depends" "LinkingTo" $ snapshot.type : chr "implicit" $ use.cache : logi TRUE $ vcs.ignore.library : logi TRUE # Options ============================ List of 2 $ renv.consent: logi TRUE $ renv.verbose: logi TRUE # Environment Variables ============== HOME = /home/alex LANG = en_HK.UTF-8 R_LIBS = <NA> R_LIBS_SITE = /usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library R_LIBS_USER = /home/alex/Documents/GitHub/CIMMYT/renv/library/R-4.0/x86_64-pc-linux-gnu:/tmp/RtmpdZmmFV/renv-system-library RENV_DEFAULT_R_ENVIRON = <NA> RENV_DEFAULT_R_ENVIRON_USER = <NA> RENV_DEFAULT_R_LIBS = <NA> RENV_DEFAULT_R_LIBS_SITE = /usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library RENV_DEFAULT_R_LIBS_USER = ~/R/x86_64-pc-linux-gnu-library/4.0 RENV_DEFAULT_R_PROFILE = <NA> RENV_DEFAULT_R_PROFILE_USER = <NA> RENV_PROJECT = /home/alex/Documents/GitHub/CIMMYT # PATH =============================== - /usr/local/sbin - /usr/local/bin - /usr/sbin - /usr/bin - /sbin - /bin - /usr/games - /usr/local/games - /snap/bin - /usr/lib/rstudio/bin/postback # Cache ============================== There are a total of 166 package(s) installed in the renv cache. Cache path: "~/.local/share/renv/cache/v5/R-4.0/x86_64-pc-linux-gnu"Again the lockfile seems to not exist
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laravel this page has expired due to inactive Package Development
in laravel 8 I want to make a composer package using livewire, but when I render the page I got a popup SMS "laravel this page has expired due to inactive ".
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Developing an npm subpackage
I'm trying to patch one of the web3's subpackages,
web3-providers-http, and use it in my app. I have runnpm link web3, and my app uses the local web3 code instead of the one that it got from npm. However, web3 seems to use its own submodules through the package system, so the local web3 code still uses the "official"web3-providers-httpsource instead of the one I patched. I tried linkingweb3-providers-httpas well, but it didn't help, because the code in that subpackage is used by another subpackage,web3-core-requestmanager, which is used byweb3-core-method, etc. Do I have to link all of the subpackages to be able to use one of them?